Reactome
This is a network of protein–protein interactions in the species Homo
sapiens, i.e., in Humans. The data is curated by the Reactome project, an
open online database of biological pathways.
Metadata
Statistics
Size  n =  6,327

Volume  m =  147,547

Loop count  l =  1,387

Wedge count  s =  20,746,788

Claw count  z =  1,500,721,941

Cross count  x =  114,486,893,851

Triangle count  t =  4,187,734

Square count  q =  521,539,475

4Tour count  T_{4} =  4,255,595,272

Maximum degree  d_{max} =  855

Average degree  d =  46.640 4

Fill  p =  0.007 370 49

Size of LCC  N =  5,973

Diameter  δ =  24

50Percentile effective diameter  δ_{0.5} =  3.497 02

90Percentile effective diameter  δ_{0.9} =  5.390 42

Median distance  δ_{M} =  4

Mean distance  δ_{m} =  4.142 04

Gini coefficient  G =  0.656 737

Balanced inequality ratio  P =  0.241 852

Relative edge distribution entropy  H_{er} =  0.911 682

Power law exponent  γ =  1.364 51

Tail power law exponent  γ_{t} =  1.741 00

Degree assortativity  ρ =  +0.244 874

Degree assortativity pvalue  p_{ρ} =  0.000 00

Clustering coefficient  c =  0.605 549

Spectral norm  α =  208.170

Algebraic connectivity  a =  0.013 403 5

Nonbipartivity  b_{A} =  0.553 695

Normalized nonbipartivity  b_{N} =  0.027 970 9

Spectral bipartite frustration  b_{K} =  0.000 437 614

Plots
Matrix decompositions plots
Downloads
References
[1]

Jérôme Kunegis.
KONECT – The Koblenz Network Collection.
In Proc. Int. Conf. on World Wide Web Companion, pages
1343–1350, 2013.
[ http ]

[2]

Geeta JoshiTopé, Marc Gillespie, Imre Vastrik, Peter D'Eustachio, Esther
Schmidt, Bernard de Bono, Bijay Jassal, Gopal Gopinath, Guanming Wu, Lisa
Matthews, Suzanna Lewis, Ewan Birney, and Lincoln Stein.
Reactome: A knowledgebase of biological pathways.
Nucleic Acids Res., 33(Database):D428–D432, 2005.
